Can Early ctDNA Changes Predict Immunotherapy Response in Colorectal Cancer?

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Immune checkpoint inhibitors (immunotherapies)have transformed treatment for metastatic colorectal cancer (mCRC), particularly when tumors show dMMR/MSI-H as a biomarker.
dMMR/MSI-His a biomarker arising from disruption of the DNA mismatch repair (MMR) system, characterized by microsatellite instability (MSI-H) and mismatch repair deficiency (dMMR).
This increases sensitivity to immunotherapies by making it easier for the immune system to recognize the tumor .
Approximately 5% of patients with metastatic colorectal cancer have a dMMR/MSI-H profile.
Although dMMR/MSI-H tumors respond well to immunotherapies, two critical questions remain unanswered:
- Which patients show a lack of response to initial treatment (primary resistance)?
- When should treatment be stopped in patients who respond?
Answering these questions is crucial for preventing unnecessary side effects and the rational use of costly treatments .
New hope: The change in ctDNA (circulating tumor DNA) levels just 1 month after treatment begins!
These findings were reported on July 18, 2025, in JAMA Oncology in a study published by Taïeb J. and colleagues.

SAMCO-PRODIGE 54 Trial
- Phase 2 randomized clinical trial
- Participants: dMMR/MSI-H mCRC patients (99 patients)
- Two arms:
- Avelumab (anti–PD-L1 immunotherapy)
- Standard chemotherapy ± targeted therapy
- Blood samples were collected before treatment (V1) and at month 1 (V2)
- ctDNA was analyzed using the WIF1 and NPY methylation markers, with the ddPCR method
📊 Main Findings
- Baseline ctDNA presencewas not associated with survival.
- However, a ≥86% ctDNA reduction at month 1:
- Progression-free survival (PFS): A 3-fold lower risk of progression (HR: 2.98; p < .001)
- Overall survival (OS): A 3.6-fold lower risk of death (HR: 3.61; p < .001)
- In the Avelumab arm: Patients with a poor ctDNA response had a 17-fold higher risk of death (HR: 17.40; p < .001)
- Concordance between a good ctDNA response and radiological response was over 90%
Clinical Interpretation
- After just 1 month, a blood test can show whether the treatment is working
- If an early ctDNA decrease is absent → consider alternative treatment
- If a strong ctDNA response is present → treatment duration may be shortened
- Combining ctDNA response with radiological assessment (RECIST) can provide much stronger and more reliable predictions about the disease course.
📉 Summary in Numbers
| Patient Group | PFS (months) | OS (months) | Hazard Ratio (HR) |
|---|---|---|---|
| Good ctDNA Response (≥86% reduction) | 12.0 | Not reached | Reference |
| Poor ctDNA Response (<86%) | 2.4 | 14.0 | PFS HR: 2.98; OS HR: 3.61 |
| Avelumab + poor ctDNA response | 2.3 | 15.0 | OS HR: 17.40 |
⚠️ Limitations
- The number of participants was relatively small (99 patients)
- ctDNA was measured only at month 1 in this assessment
- Only Avelumab was tested; other immunotherapies were not included in the trial
Conclusion: ctDNA Monitoring May Be a New Compass
SAMCO-PRODIGE 54 showed that, in immunotherapy-treated dMMR/MSI-H mCRC patients, early changes in ctDNA levels may be useful for predicting:
- Treatment response
- Development of drug resistance
- Long-term survival
as a powerful biomarker.
💡 ctDNA data, when assessed alongside conventional radiological imaging , may usher in a new era in personalized oncology .
🔍 Technology Behind the ctDNA Test Used
There are two main approaches to ctDNA analysis:
-
Tumor-informed: Specifically designed according to unique genetic mutations in the patient’s tumor tissue. Sensitivity is high, but time and cost may be limiting.
-
Tumor-agnostic: Requires no tumor-specific information. Relies on universal genetic or epigenetic markers. Faster and more suitable for clinical implementation.
📌 This study used a tumor-agnostic approach. That is, analysis used ctDNA methylation markers (WIF1 and NPY) without patient-specific mutation analysis.
🧪 Method Used
- Markers: WIF1 and NPY (methylation patterns)
- Technology: Bisulfite conversion + droplet digital PCR (ddPCR)
- Timing: Before treatment (V1) and month 1 (V2)
Because it does not require mutation analysis of tumor tissue, this method is considered fast, affordable and easy to implement clinically .
💡 Tumor-Agnostic vs Tumor-Informed Comparison
| Feature | Tumor-Informed | Tumor-Agnostic (This study) |
|---|---|---|
| Is tumor tissue required? | Yes | No |
| Individually designed? | Yes (based on specific mutations) | No (universal methylation markers) |
| Sensitivity | Very high (LOD < 0.01%) | Moderate (LOD ~0.2%) |
| Suitable patient profile | MRD / early-stage patients | Metastatic disease, high tumor burden |
| Clinical feasibility | Difficult, time-consuming | Easy, fast, cost-effective |
✅ Why Was the Tumor-Agnostic Method Chosen?
- In metastatic CRC patients, ctDNA levels are generally high → ddPCR is sufficient
- Rapid, inexpensive implementation offers a clinical advantage
- Goal: Detect the early response to treatment
🎯 ctDNA and MRD in Solid Tumors: New Horizons
Although this trial produced strong signals, some unanswered questions remain important:
- What is the best ctDNA testing strategy?
- What are the optimal monitoring intervals?
- Does ctDNA negativity always mean a good prognosis?
- If ctDNA and RECIST disagree, which should guide decisions?
Larger, prospective studies with multiple time points are needed to answer these questions.
However: The data already obtained provide a strong foundation for integrating ctDNA into clinical decision support tools in practice.
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